Protein dna interaction database
Webb10 maj 2006 · A biological object can be a protein, DNA, RNA, ligand, molecular complex, gene, photon or an unclassified biological entity. BIND records are created for interactions which have been shown experimentally and published in at least one peer-reviewed journal. WebbThe Human Protein Interaction Database (HPID, http://www.hpid.org) was designed 1) to provide human protein interaction information pre-computed by a statistical method from existing structural and experimental data, 2) to provide integrated human protein interactions derived from BIND, DIP and HPRD, and 3) to find proteins from the …
Protein dna interaction database
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Webb16 apr. 1999 · A detailed analysis of the DNA-binding sites of 26 proteins is presented using data from the Nucleic Acid Database (NDB) and the Protein Data Bank (PDB). … WebbProtein-Protein Interaction NetworksFunctional Enrichment Analysis. Organisms. 14094. Proteins. 67.6 mio. Interactions.
Webb11 apr. 2024 · Here we frame the cis-regulatory code (that connects the regulatory functions of non-coding regions, such as promoters and UTRs, to their DNA sequences) as a representation building problem. Representation learning has emerged as a new approach to understand function of DNA and proteins, by projecting sequences into high … Webb11 nov. 2010 · Protein–RNA interactions play critical roles in myriad and diverse biological processes, including many recently discovered regulatory functions, in addition to well …
http://melolab.org/pdidb/web/content/links Webb8 feb. 2024 · We found that disease-associated mutations from the Human Gene Mutation Database ... Although p.Arg382Trp disrupts the interaction of HOMEZ and EBF1, it may also alter protein–DNA interaction.
Webb18 jan. 2007 · The rapidly increasing amount of protein-DNA interaction data at a genome scale requires a database that facilitates efficient data storage, retrieval and integration. Description: Here, we report the implementation of a C. elegans differential gene expression database (EDGEdb).
WebbBrucellosis, also known as “undulant fever” is a zoonotic disease caused by Brucella, which is a facultative intracellular bacterium. Despite efforts to eradicate this … civics testingWebbAbstract. This article describes approaches for identifying proteins that bind conserved or functional DNA motifs. It discusses the use of consensus sequence databases to identify douglas county wa land recordsWebb4 okt. 2024 · ProNAB contains 20 090 entries, which include 14 606 and 5323 entries for protein–DNA and protein–RNA binding affinities, respectively along with 161 entries for … civics transparency actWebbNon-histone nuclear proteins HMGB1 and HMGB2 (High Mobility Group) are involved in many biological processes, such as replication, transcription, and repair. The HMGB1 … douglas county wa building departmentWebb31 okt. 2024 · RNA–DNA interactions from ChIRP-seq processing. In NPInter v4.0, we have included RNA–DNA interactions derived from all ChIRP-seq datasets published on the … civics today testsWebbValidation of selected expression results and database comparison analyses ... Our data suggest that QC inhibits RBG and this inhibition promotes DNA damage by directly downregulating the NS–RAD51 interaction. Additionally, QC showed strong ... (NS/GNL3), a nucleolar RBG and DNA repair protein, and the RPA194 catalytic subunit of Pol I ... civic stickersWebbProtein-DNA interactions plays a significant role in many biological processes such as regulation of gene expression, DNA replication, repair, transcription, recombination, and packaging of chromosomal DNA. The protein that are involved in these interactions can act as an enzyme that catalyzes the biochemical reactions. douglas county warrants list